孙善文 教授/博士生导师
联系方式:
E-mail:sunshanwen@nefu.edu.cn
地址：黑龙江省哈尔滨市香坊区和兴路26号
东北林业大学生命科学学院（新逸夫教学楼）226房间
教育经历：
2014-10至2019-04，德国拜罗伊特大学，博士，导师：Bettina Engelbrecht
2010-09至2014-07，中国科学院西双版纳热带植物园，硕士，导师：曹坤芳研究员
2006-09至2010-07，东北师范大学，城市与环境科学学院，学士
工作经历：
2019-09至2021-04，电子科技大学，博士后，导师：邹权教授
2021-05至今 东北林业大学，教授，博士生导师
研究领域：
生物序列分析，基因组学，人工智能
科研项目：
主持国家自然基金委青年基金项目和面上项目各1项，东北林业大学引进人才项目1项，中央高校项目1项，黑龙江省项目2项，各类项目到账经费总额200余万元。
学术兼职：
JDSIS期刊编辑，Frontiers集团杂志的Guest Editor，主持专刊一份，Nature chemical biology等期刊审稿人
中国自动化学会委员
中国人工智能学会委员
中国计算机学会会员
发明专利：
一种RNA测序数据的基因表达量计算方法。专利号：ZL 2020 1 0603775.3
论文发表：
Chen, B., Wang, M., Guo, Y., Zhang, Z., Zhou, W., Cao, L., Zhang, T., Ali, S., Xie, L., Li, Y., Zinta, G.,Sun, S., & Zhang, Q. Climate-related naturally occurring epimutation and their roles in plant adaptation in A. thaliana. Molecular Ecology 2024;00:e17356.（共同通讯作者；中科院生物学1区、TOP期刊，影响因子7.7）
Zhao Y, Gui L, Hou C, Zhang D, andSun S* (2024) GwasWA: A GWAS one-stop analysis platform from WGS data to variant effect assessment. Computers in Biology and Medicine. 169:107820. (影响因子7.7，中科院二区，Top期刊)
Sun S, Ye X*, and Zou Q* (2023) Editorial: Machine learning on understanding the epigenetic mechanisms underlying plant adaptation and domestication. Front. Plant Sci. 14:1236787. (影响因子：5.6，中科院二区，Top期刊)
Chen B, Guo Y, Zhang X, Wang L, Cao L, Zhang T, Zhang Z, Zhou W, Xie L, Wang J,Sun S* (共同通讯), Yang C*, and Zhang Q* (2022) Climate-responsive DNA methylation is involved in the biosynthesis of lignin in birch. Front. Plant Sci. 13:1090967. (影响因子：5.6，中科院二区，Top期刊)
Wang X,Sun S(共同第一作者), Sedio B, Glomglieng S, Cao M, Cao K, Yang J, Zhang J*, and Yang J* (2022). Niche differentiation along multiple functional-trait dimensions contributes to high local diversity of Euphorbiaceae in a tropical tree assemblage. Journal of Ecology, 110, 2731–2744. (影响因子：6.381，中科院一区，Top期刊)
Ding K,Sun S(共同第一作者), Luo Y, Long C, Zhai J, Zhai Y, and Wang G* (2023) PlantCADB: A Comprehensive Plant Chromatin Accessibility Database. Genomics, Proteomics & Bioinformatics, 21, 311-323. (影响因子：9.5，中科院一区，Top期刊)
Sun S, Dong B*, and Zou Q*. Revisiting genome-wide association studies from statistical modelling to machine learning. Briefings in Bioinformatics. 22 (4), bbaa263. (影响因子：8.990，中科院一区，Top期刊)
Sun S, Xu L*, Zou Q*, and Wang G*. BP4RNAseq: a babysitter package for retrospective and newly generated RNA-seq data analyses using both alignment-based and alignment-free quantification method. Bioinformatics. 37 (9), 1319–1321. (影响因子：5.610，中科院一区，Top期刊)
Sun S*, Jung E, Gaviria J, and Engelbrecht B M J. Drought survival is positively associated with high turgor loss point in temperate perennial grassland species. Functional Ecology, 2020, 34:788-798. (影响因子：4.43，中科院一区，Top期刊)
Sun S, Ding H, Wang D*, and Han S*. Identifying antifreeze proteins based on key evolutionary information. Frontiers in Bioengineering and Biotechnology, 2020, 8:1-8. (影响因子：3.644，中科院二区)
Sun S, Wang C, Ding H, and Zou Q*. Machine learning and its applications in plant molecular studies. Briefings in functional genomics, 2020, 19:40-48. (影响因子：2.941，中科院二区)
Sun S, Ao C, Wang D*, and Dong B*. The frequencies of oppositely charged, uncharged polar, and β-branched amino acids determine proteins' thermostability. IEEE Access, 2020, 8:66839-66845. (影响因子：3.745，中科院二区，Top期刊)
Jung E, Gaviria J,Sun S, and Engelbrecht B M J*. Comparative drought resistance of temperate grassland species: testing performance trade-offs and the relation to distribution. Oecologia, 2020:1-14. (影响因子：2.915，中科院二区)
Bartlett M K*, Zhang Y, Yang J, Kreidler N,Sun S, et al. Drought tolerance as a driver of tropical forest assembly: resolving spatial signatures for multiple processes. Ecology, 2016, 97:503-514. (影响因子：4.7，中科院一区，Top期刊)
Bartlett M K*, Zhang Y, Kreidler N,Sun S, et al. Global analysis of plasticity in turgor loss point, a key drought tolerance trait. Ecology Letters, 2014, 17:1580-1590. (影响因子：8.665，中科院一区，Top期刊)
Bartlett M K*, Scoffoni C, Ardy R, Zhang Y,Sun S, et al. Rapid determination of comparative drought tolerance traits: using an osmometer to predict turgor loss point. Methods in Ecology and Evolution, 2012, 3:880-888. (影响因子：6.51，中科院一区，Top期刊)
